PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028595
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 320aa    MW: 35436.6 Da    PI: 10.2249
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028595genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.22e-09170228563
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  kr++r   NR +A rs +RK  ++ eLe+kv++L+ae ++L  ++  l+    +l++e+
  Lus10028595 170 KRAKRILANRQSAARSKERKIRYTGELERKVQTLQAEATTLSAQVTVLQRDTNALTTEN 228
                  9********************************************99999999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.0E-15166230IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.967168231IPR004827Basic-leucine zipper domain
PfamPF001704.4E-8170228IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-10170225No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-10170224No hitNo description
CDDcd147037.93E-22171220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MIRGGKRPMT EDIIDQMPET PHRGSHHRRA HSDTSFRFDD LLLFDPSDLD LSSLDLLTPT  60
PPLPQNSMAL DSPPMSEDSA SNGGSAAQRG AKPINHVRSL SVDSDFFEGF RLGFGDEKPA  120
GERKRSNHRH SNSMDGSSCS ASFEADLLAG GVKKSMAPDR LAELARIDPK RAKRILANRQ  180
SAARSKERKI RYTGELERKV QTLQAEATTL SAQVTVLQRD TNALTTENKE LKLRLQALEQ  240
QTHLRDALNE TLRDEVQRLR IAAGEMPPSN RNPFRRTLGT QFSSQQPPHH QGLPPQSPPS  300
NQGLNAPPRP SYSNFSQRV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8303920.0EU830392.1 Linum usitatissimum clone LU0008A06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300925.21e-123hypothetical protein POPTR_0002s07020g
SwissprotQ9MA751e-96VIP1_ARATH; Transcription factor VIP1
TrEMBLA9PIJ91e-123A9PIJ9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21300.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52143450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.13e-75VIRE2-interacting protein 1